What is the gut microbiome?

Author: Dr Gregory Crocetti

31 October 2018 Education
A male body showing a illustration a outline of his gut microbiome in detail

The gut microbiome has gained increasing popularity in recent years, but what exactly is it and how can it influence our health?

The human microbiome refers to the diverse ecosystem of microorganisms located in our bodies, with the highest concentration being found in the lower part of the large intestine – this is often referred to as the gut microbiome.

The broad range of microorganisms found throughout the human body (including bacteria, protists, viruses, fungi and archaea) can vary widely in diversity and functionality. Different areas of the body develop their own specific combination of microorganisms as part of its normal function, and this collection of microorganisms that live in the same community is called the microbiota.

The human microbiota is overwhelmingly dominated by bacteria, with approximately 99%1 of these bacteria found in the lower part of the large intestine – often referred to as the gut microbiome. A recent study estimated there are about 40 trillion bacteria living in the human gut2 – just slightly more than all of our own human cells. There is a growing body of global research indicating that these 40 trillion bacterial cells making up our gut microbiome play a central role in health and disease. What is not understood though, is how the gut microbiome is influencing our health and this is what scientists are seeking to discover.

So what exactly is the microbiome?

The term microbiome refers to the full collection of all the genes contained by the microorganisms in a community. Gut bacteria have the ability to produce a large and diverse number of metabolites that can perform a variety of functions, but our microbiome is more than just bacteria, it also includes bacteriophage viruses, fungi and protists. Bacteriophage viruses are viruses that only infect bacteria and they potentially outnumber bacteria in the gut3. The genome (the DNA instructions for an organism’s construction and maintenance) of each individual gut microorganism is much smaller than our own human genome. However, their collective genetic and metabolic capacity (the combination of what they can all do) is much greater – with some scientists describing our gut microbiome as a hidden organ4.

Why is the microbiome important?

The complex interactions of our resident microbes play vital roles in nearly every aspect of our lives – including synthesising many of our vitamins5, protecting us from a range of toxins and diseases6, and shaping and regulating our immune systems7. And, perhaps most amazingly, recent research also suggests gut bacteria produce neurotransmitters8 such as serotonin, dopamine and GABA, affecting how we think and feel.

There is also a growing body of research suggesting that having an understanding of the bacterial species living in our gut and what they are capable of can provide beneficial insights into our individual health and wellbeing.

With recent advances in technology, it is now possible to have your gut microbiome sequenced to understand the unique make up of your gut microbiome. Most testing companies can tell you what the bacterial species are in your microbiome, but tests that use metagenomic sequencing such as the Microba InsightTM Sampling Kit can also tell you the way each microorganism potentially functions or contributes to your wellbeing.



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A human gut microbial gene catalogue established by metagenomic sequencing.
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